@fabio, thanks for your response. Thank you for correcting me on Noctua's recommended orientations for the L12S. Still, your results show that there is a significant benefit to having the heatpipes up. It would be interesting to see that orientation plus the 92mm exhaust up top IMO, for science if no other reason. Either way, I think you are correct - this case needs the hot air actively exhausted for best system cooling results.
I've included the data from your latest tests in my analysis and the results are below. These data are normalised to ambient temperature, so the displayed values are delta temps (Component temp - Ambient temp). Note that the gradient is from coolest (green) to warmest (red).
The data shows that the coolest system overall is the Easter Egg one. Not surprising really - there's more air blowing over the components to cool them than in any other combination.
The interesting one is the L12S 90 degrees exhaust, top A12x25 exhaust. This produces the coolest system components EXCEPT for the CPU, which is the second hottest of all combinations. My hypothesis on this is that the more powerful A12x25 is sucking air past the A12x15, starving it of air to exhaust through the L12S. This is why I thought a L12x15 might be better as the intake or exhaust fan, to provide a balance of air flow.
It really does beg the question of what is the best setup. L12S Intake + case exhaust = best CPU temps (and really good GPU temps), but worse temps for other system components. L12S exhaust + case exhaust = poor CPU temps, but all other temps are the best. Perhaps a 120mm AIO is the best? This might provide the best of both worlds, though it may pose problems once the GPU is loaded and warm air is getting sucked through the rad. (and the results in general might change with the GPU also loaded)
Just for interest sake, do you mind running the L12S without a fan at all and with the top exhaust? I wonder if that top exhaust will be enough to pull air through the L12S. I don't want you to damage your CPU, so it's entirely up to you of course! From reading your posts you know the limits of hardware much better than I, so I'll leave it to you to decide whether or not that is a good idea. I still do wonder if you could get away with a 65W CPU and a fanless L9x65 as an example (or a larger copper heatsink) and use the top exhaust fan to pull air through it........