So I wanted to share my tale of woe with the community. After trolling through the community forum, it looked like most folks go for either a low profile CPU air-cooler, or a 92mm/120mm AIO. But looking at some of the examples in the HoF on Dan's page, I couldn't help but wonder, would it be possible to put a fully custom water loop inside the case, without having to use any external components?
My imagination ran with that idea, and after a lot of research, and finally came up with a plan that I thought would work. You can see the progress/work done on imgur:
Got everything installed (which was a huge pain), powered the system on with my fingers crossed...and realized the pump was way louder than the fans ever were, which was a huge disappointment. Looking online it seemed like the culprit was bubbles in the loop, and in my attempts to bleed them out the failure in my design became apparent. The reservoir above the pump was too shallow, and the pump too powerful for such a small loop, so when the pump was going it created a vortex that pulled more air into the system than could be bled out of it.
Thinking this could possibly be solved by lowering the voltage to the pump, I hooked up the pump to the mobo and play with the fan curves...but then the system didn't POST. Highly concerned, I pulled the entire system apart, put it back on a test bench (aircooled) to make sure everything was ok, and once it POSTed I checked the BIOS settings to see that the AIO pins would only run at 100% and couldn't be changed...
So I've abandoned the idea for now and am going back to air-cooled, but thought I would post my journey here as a cautionary tale in case others might be considering doing something similar. Or, someone may have solutions to the problems I encountered and succeed where I could not!