Here are some shots of the case built up, the first shot shows the layout and the space between the components, you can also sort of see how the airflow will work throughout the case. At the bottom of the photo you can see the hard drive bracket which can hold 2x 2.5" 15mm thick drives:
below is a closeup shot of the CPU clearance with a Noctua NH-L9i.
where are the standoffs for the motherboard?
The motherboard standoffs are to be screwed into pilot holes in the base.
You can see in the photo below that I made a mistake with the standoff hole diameters. The holes were too small for the m3 thread, to the point where the force required to screw them into the panel actually ripped the shaft clean off. So that's annoying as the front end of the board is now unsupported, I managed to get the 2 rear standoffs in though, on the plus side they all line up perfectly with the motherboard:
Here is the first shot of it built up, you can also see the rubber feet fitted, I've fitted a very old Sapphire Radeon HD 7750 as it's all I've got around me at the moment. When fully assembled the smokey grey transparent panels are difficult to see through, but I'm sure they would look good if you wanted to wack a load of RGB lighting inside the case:
Next up is what it looks like switched on, the Gigabyte Pheonix motherboard has orange LED's around its perimeter which glow through the white panel and through all the vents on the base of the case. The white Acrylic panels are slightly transparent which is why you can see the orange glow, for the final product opaque panels should be available as well which won't let the light through.
The LED's can also be deactivated on the motherboard, the B150 Pheonix is actually a great value board, it's jammed with features for its price:
To get an idea of the size of this thing here it is sitting next to one of my Birthday beers (330ml bottle):
Another scaling shot which is also highlighting it would make a great gaming machine, you can also see the power button LED and slow spinning 140mm fan:
A better shot of the side fan, the Prolimatech Vortex 140mm fan is mounted using the 120mm fan hole positions leaving the 140mm hole mounts free for a dust filter:
Dedicated ventilation on the top of the case to remove the PSU from the system heat allowing the PSU to run cooler, with the Corsair SF450 the fan remained off during stress testing of an i5-6500 and GTX 960 pairing:
Here it is from the back:
It looks like you've made a cutout for the GPU mounting flanges which is filled with a small acrylic piece afterwards. Why not just print that part without the hole?
I'm not 100% sure what you mean, but here is a closeup shot of the small panel which sits above the GPU bracket, you can also see the screws holding the card down:
how are you getting the screws to work so nicely? Did you tap the threads yourself, were the threads printed, or are you using self-tapping screws?
My plan was to use self tapping screws that just screw directly into blank pilot holes, the pilot holes are 2.6mm diameter. But to be honest the SLS plastic is so good that even non-self tapping screws just bite really well. The black hex bolts you can see are just standard m3 threads. The SLS also holds the thread form when you unscrew and re-screw them in, I would advise to great care not to overtighten the screws/bolts though. But if you do strip te threads the 3D printed parts will be available as spares.